PhD Theses

PhD students at the Bioinformatics Laboratory

In Progress 

  • Lashgari, D. Kinetic maturation in the Germinal Center. University of Amsterdam, Amsterdam. Supported by AMC. Van Kampen, A.H.C. (promotor), Van Gils, M. (co-promotor), Hoefsloot, H. C. (co-promotor).
  • Valiente, R. G. Development of multiscale mathematical models of the germinal center (GC) to study its role in B-cell lymphoma (BCL) and/or rheumatoid arthritis (RA). (PhD thesis). University of Amsterdam, Amsterdam. COSMIC. Marie Curie ITN, Horizon 2020. Van Kampen, A.H.C. (promotor), De Vries, N. (promotor), Hoefsloot, H. C. (co-promotor), Guikema, J. E. (co-promotor).
  • Nandal, U. A systems analysis of rodent animal models of human disease. University of Amsterdam, Amsterdam. NBIC BioRange. Van Kampen, A.H.C. (promotor), Moerland, P.D. (co-promotor).
  • Balashova, D. Repertoire sequencing. University of Amsterdam, Amsterdam. ARCAID. Marie Curie COFUND, Horizon 2020. Van Kampen, A.H.C. (promotor), De Vries N. (promotor), Greiff V. (co-promotor).
  • Mahamune, U. Single Cell RNAseq and computational modelling.  University of Amsterdam, Amsterdam. ARCAID. Marie Curie COFUND, Horizon 2020. Van Kampen, A.H.C. (promotor), Moerland, P.D. (co-promotor), E.G.M. van Baarsen (co-promotor).

Finished

  • Tejero Merino, E. (2022). 7 November 2022 Multiscale modelling of plasma cell differentiation in the Germinal Center. University of Amsterdam, Amsterdam. Supported by AMC. Van Kampen, A.H.C. (promotor), Guikema, J.E.J. (co-promotor), Hoefsloot, H. C. (co-promotor). [PhD thesis] [UvA-DARE]
  • Stobbe, M. (2012). 18 October 2012. The road to knowledge: from biology to databases and back again. University of Amsterdam, Amsterdam. NBIC BioRange. Van Kampen,  A.H.C. (promotor),  Moerland, P. D. (co-promotor) [UvA-DARE]
  • Shahand, S. (2015). 1 October 2011 – 1 October 2015. Science gateways for biomedical big data analysis. University of Amsterdam, Amsterdam. COMMIT. Van Kampen,  A. (promotor), Olabarriaga, S. (co-promotor) [UvA-DARE]
  • Reshetova, P. (2017). 2 March 2017. Use of Prior Knowledge in Biological Systems Modelling. University of Amsterdam, Amsterdam. NBIC Biorange. Van Kampen,  A.H.C (promotor), Smilde, A.  (promotor), Westerhuis, J.  (co-promotor) [UvA-DARE]

Co-supervised PhD students from other research groups

In Progress

  • Balzaretti, G. Repertoire Sequencing. University of Amsterdam, Amsterdam. De Vries, N. (promotor), Van Kampen, A.H.C. (promotor)
  • Pollastro, S. Repertoire Sequencing. University of Amsterdam, Amsterdam. De Vries, N. (promotor), Van Kampen, A.H.C. (co-promotor)
  • Stratigopoulou, M. Germinal Center and B-cell Lymphoma. University of Amsterdam, Amsterdam. COSMIC. Marie Curie ITN, Horizon 2020. Van Kampen, A.H.C. (promotor), Van Noesel, C. J. (promotor), De Vries, N. (co- promotor), Guikema, J. E. (co-promotor)
  • Olivieri, A. Repertoire Sequencing. University of Amsterdam, Amsterdam. ARCAID, Marie Curie COFUND, Horizon 2020. De Vries, N. (promotor), Van Kampen, A.H.C. (promotor).
  • Anang, D. Germinal Center and Rheumatoid Arthritis. University of Amsterdam, Amsterdam. COSMIC. Marie Curie ITN, Horizon 2020. De Vries, N. (promotor), Van Kampen, A.H.C. (promotor), Guikema, J. E. (co-promotor).

Finished

  • Sontrop, H. (2015). 15 January 2015. A critical perspective on microarray breast cancer gene expression profiling. TU Delft, Delft. NBIC BioRange. Reinders, M. (promotor), Moerland, P. D. (co-promotor)
  • Wegdam, W. ([to add]). Protein profiles in ovarian cancer patients. University of Amsterdam, Amsterdam. Aerst H. (promotor), Kenter, G.  (promotor), Moerland, P.D. (co-promotor)
  • Beckman, W. (2021). 17 August 2021. The Role of Epigenetics in Transcriptional Stochasticity and the Implications for Breast Cancer Drug Resistance. University of Amsterdam, Amsterdam. EpiPredict. Marie Curie ITN, Horizon 2016. Pernette Verschure (promotor), Van Kampen, A.H.C. (promotor) [UvA-DARE]
  • Barros, R. S. (2022). 1 November 2022 High performance computing for clinical medical imaging. University of Amsterdam, Amsterdam. Henk Marquering (promotor), Van Kampen, A.H.C. (promotor), Olabarriaga, S. (co-promotor) [UVA-DARE]